Wednesday, October 23, 2013

Red Root Rot of Corn being Observed at Harvest


Red root rot is a late season disease characterized by the pink to red discoloration of the root and crown tissue, usually not apparent until just prior to senescence.  Above ground symptoms develop quickly in a 4 to 5 day interval during late ear fill. Stalks and foliage turn a green to gray color and the plant will die prematurely. Depending on weather conditions, severe lodging can occur following infection. Symptoms of this disease are most frequently seen where corn is grown in high population, fertility, and irrigated environments.
The causal agents of red root rot are complex of fungi that includes Phoma terrestris as the primary pathogen in association with Pythium and Fusarium species. P. terrestris is widespread saprophytic organism that colonizes the underground parts of a variety of hosts. It is very resilient, being able to survive for years in the soil under a wide range of temperature and pH conditions through the use of fungal structures called, microsclerotia. Recent research indicates that early infection of Pythium and other fungal species weakens the root system allowing P. terrestris to invade earlier and more effectively.  Further research is needed to provide more details on this disease. (Blog and pictures provided by Nick Prudhomme, U of I Plant Clinic Student.)


Multicellular microsclerotia of Phoma terrestris


Tuesday, October 8, 2013

Got Rot in Your Onions after Harvest?



The above onion sample consisted of two mature bulbs that were suffering from an unknown soft rot, infested with small maggots, and also showing signs of black fungal growth. All contributing factors were identified; however none of these pests or pathogens are the primary cause for the damage noted. All insect, fungal, and bacterial pests found are post harvest problems that only appear after injury or improper curing.

One of the fungal, postharvest pathogens recovered from this sample was Rhizopus spp.  It is the cause of mushy rot. This pathogen appears on onions stored with high moisture content and humidity. Onions should be grown with good management practices in order to reduce foliar and bulb diseases.  Be sure to handle bulbs carefully during harvest, transport, and storage to prevent sunscald, bruising, cutting, or freezing injury.  After the bulbs have cured, bulbs should be stored below 15 degrees C with a relative humidity of 50%.  These management suggestions were taken from the Compendium of Onion and Garlic Diseases and Pests.

Bacterial soft rot was also found on the onion sample.  It is often caused by a combination of many bacterial pathogens. The most important step to controlling this disease is proper curing and storage of mature onion bulbs after harvesting. Fertilization and irrigation should cease early in the season to allow for bulb maturity.  Onion tops should be allowed to mature (more that 90% lodged) before harvest.  No moist or green tissue should be left on the necks of the bulbs so that they are properly cured.  Avoid bruising and handling during harvest.  Onions should only be stored after they have been well dried.  Storage at 0 degrees C and less than 70% relative humidity with good ventilation will prevent condensation of moisture on the surface of bulbs and therefore; helps to reduce the rate of development and the spread of soft rots.  These management suggestions were taken from the Compendium of Onion and Garlic Diseases and Pests.

Onion maggot pupae and adults were identified within the onion sample. Later in the season, damage can occur by second and third generation larvae, but it is less common of a problem on healthy onions, because the developing bulb is difficult for the larvae to penetrate. We suspect that the problem, in this case, was that the onion maggot larvae were able to enter through a preexisting wounds due to disease or injury of the bulb.  Onion maggot injuries are almost always associated with secondary rotting organisms; therefore, further decay can follow wounding by third generation onion maggots infection in the field and continue during storage. For additional information, you can refer to the following link:  http://urbanext.illinois.edu/vegproblems/rootmaggots.cfm
To help manage onion maggots, a rotation from onions is recommended, remove cull onions after harvest, remove volunteer onions in spring, minimize herbicide and cultivation damage, and destroy nearby weeds.  Insecticides may not be available to homeowners.

It is very, likely that several other secondary, postharvest pathogens could have been isolated from this sample. Overall, to avoid most bulb rots, you need to: control leaf diseases, let onion tops ripen (fall over) naturally,   dry bulbs before storage, and avoid storing improperly cured or injured bulbs.  Store bulbs under cool, dry conditions.  Do not expose cured bulbs to sunscald, water, or high humidity.
(Sean Mullahy and Stephanie Porter)

Thursday, September 26, 2013

SAVE THE DATE: University of Illinois Plant Clinic and Illinois Cooperative Agricultural Pest Survey (CAPS) Upcoming Outreach


Illinois Department of Agriculture Welcomes You to the 43rd Annual Meeting of the Horticultural Inspection Society-Central Chapter, October 22-24, 2013, The Morton Arboretum, Lisle, IL, http://nationalplantboard.org/hiscc/Documents/2013_HIS_Registration.pdf
October 22, 2013 am- All You Ever Wanted to Know about Tree Cankers and More, Stephanie Porter, U of I Plant Clinic Diagnostician and Outreach Coordinator
October 22, 2013 – Illinois Forest Pest Surveys, Kelly Estes, State Survey Coordinator, Illinois Cooperative Agricultural Pest Survey Coordinator

Illinois Arborist Association, 31st Annual Conference and Trade Show, October 21-23, 2013, Holiday Inn/Tinley Park Convention Center, Tinley Park, IL, http://illinoisarborist.org/31st-annual-conference-trade-show-october-21-23-2013/
October 23, 2013 10:45am - Tree Problems Diagnosed at the U of I Plant Clinic, Stephanie Porter, U of I Plant Clinic Diagnostician and Outreach Coordinator

2013 Annual Gypsy Moth Review, November 5-7, Orrington Hotel, Evanston (Chicago), IL, https://sites.google.com/site/ngmmbsite/AGMRHome
November 6, 2013 10:40am- An Overview of the Success of the 2013 Illinois First Detector Workshops, presented by Stephanie Porter, U of I Plant Clinic Diagnostician and Outreach Coordinator
November 7, 2013 9:50am – Thousand Cankers Disease, Kelly Estes, State Survey Coordinator, Illinois Cooperative Agricultural Pest Survey Coordinator

2014 Gateway Green Industry Conference & Trade Show (formerly Southern Illinois Grounds Maintenance), January 14-15, Collinsville, IL, the 32nd Conference & Trade Show Presented by University of Illinois Extension, http://www.stlouislandscape.org/index.cfm/fuseaction/calendar.detail/event_id/303/location/77/index.htm
January 15, 2014 2:45pm - Review of the Most Prevalent Plant Diseases Observed at the U of I Plant Clinic in 2013, Stephanie Porter, U of I Plant Clinic Diagnostician and Outreach Coordinator

iLandscape Show, February 5-7, 2014, Renaissance Schaumburg Convention Center and Hotel, Schaumburg, IL  http://www.ilandscapeshow.com/
February 7, 2014 TBA- 2013 Plant Problems Observed at the U of I Plant Clinic, Stephanie Porter, U of Plant Clinic Diagnostician and Outreach Coordinator

2014 Illinois Regional Crop Management Conferences
 January 22-23, 2014: Illinois Crop Management Conference – Mt. Vernon. Krieger’s/Holiday Inn Convention Center, For further information contact Robert Bellm, 618-427-3349 rcbellm@illinois.edu
January 29-30, 2014: Illinois Crop Management Conference – Springfield. Northfield Inn Conference Center. For further information contact Robert Bellm, 618-427-3349, rcbellm@illinois.edu
 February 5-6, 2014: Illinois Crop Management Conference – Champaign. I-Hotel & Conference Center. For further information contact Dennis Bowman, 217-244-0851, ndbowman@illinois.edu
 February 12-13, 2014: Illinois Crop Management Conference – Malta. Kishwaukee College Convention Center. For further information contact Russ Higgins, 815-274-1343, rahiggin@illinois.edu

2014 Illinois First Detector Dates:
Plan to attend these workshops focusing on current and emerging pests of landscape and nursery pests!
For further updates and information, please refer to the following link:  http://wwx.inhs.illinois.edu/research/caps/first-detector/
  • ·         January 14, 2014 Peoria
  • ·         January 16, 2014 Collinsville
  • ·         February 20, 2014 Murphysboro
  • ·         February 27, 2014 Rockford
  • ·         March 12, 2014 Decatur
  • ·         March 27, 2014 Joliet


Wednesday, August 7, 2013

What is all the Buzz about the Brown Spots on Corn?

With the wet weather, there seems to be more scouting occurring in fields, which is good.  Many have asked about the brown spots that they have been finding on corn stalks, leaf sheaths, and leaves. 

Purple leaf sheath (Picture taken by Matt Montgomery)

Purple leaf sheath (Picture taken by Matt Montgomery)

The pictures above show an abnormality called purple leaf sheath, which is a harmless discoloration caused saprophytic fungi and bacteria developing on pollen and particulate matter lodged between the stalk and leaf sheath.  The Compendium of Corn Diseases states the following about purple leaf sheath:
"Irregular, purplish brown blotches and spots of varying size form on the leaf sheaths, usually after silking.  This harmless discoloration occurs when saprophytic fungi, such as yeasts and Fusarium spp., and bacteria develop on pollen and other particulate matter lodged between the stalk and leaf sheath or after an infestation of aphids.  The stalk under the sheath is not discolored or infected.  This is not a new disease and there is NO NEED TO BE ALARMED!

Purple leaf sheath may be confused with Physoderma brown spot, which is a fungal disease that can infect corn stalks; however, Physoderma brown spot usually also causes symptoms on the leaves as seen in the pictures below.

Physoderma brown spot (Picture taken by Matt Montgomery)
Bands of lesions across the leaf caused by Physoderma brown spot (Picture taken by Matt Montgomery)
Physoderma brown spot caused by Physoderma maydis is NOT usually considered to be a threat to corn.  This disease is often seen after abundant rains and high temperatures, and infection takes place when spores are splashed into leaf whorls.  This disease might be more apt to show up in fields that consist of reduced tillage or corn on corn.  Some hybrids may consist of more resistance than others and of course, tillage can help bury the disease inoculum.  Again, there is not need for alarm if you are seeing this disease in your field.



Friday, August 2, 2013

Russet Mites found on Tomato

Recently, russet mites were discovered associated with injury on a tomato sample at the U of I Plant Clinic.  This is not a common pest found in Illinois, but serves as a reminder that we should be careful when diagnosing all plant problems.



Russet mites can be a very tiny pest of tomatoes and other plants. So tiny in fact, they can easily go without being noticed on plants and still be causing damage. They can be found in almost all areas where tomatoes are grown.  They are only about .2mm long, and if populations are high, they are capable of causing serious injury on tomatoes. Damage first becomes apparent in mid-summer when plants are half to fully grown and injury will generally start at the base, then move throughout the canopy. The highest population of mites will tend to be found where the damage is visible. A high infestation will cause leaves to start to curl and turn a russet brown color as the mites feed, sucking the juices out of any green part of the plant. Hot weather is conducive for high mite populations, and in turn, plants can even be defoliated. More information on russet mites can be found at: http://www.ipm.ucdavis.edu/PMG/GARDEN/VEGES/PESTS/tomrusmite.html 
(Information gathered by Nick Pudhomme, U of I Plant Clinic student worker)

The russet mites on this tomato sample was discovered at the Plant Clinic by examining the leaves showing symptoms under magnification:


This pest was featured in the latest Illinois Fruit and Vegetable News (IFVN) found at the following link:  http://ipm.illinois.edu/ifvn/contents.php

Dr. Richard Weinzeirl, U of I Extension Fruit and Vegetable Entomologist stated the following about the russet mite: "Tomato russet mite is smaller than two-spotted spider mite and is somewhat wedge- or cigar-shaped.  The sample came from a home garden in northern Illinois, and the tomatoes were adjacent to petunias (often associated with russet mites), but it served as reminder to point out that most miticides are not very effective for russet mite control.  Agri-mek and wettable sulfur are generally most effective against this pest."






Thursday, July 18, 2013

Why isn't my Fungicide Working in my Soybeans?


A farmer noticed some yellowing leaves in the lower canopy of his field.  They were 99.9999999999% sure that it was Septoria brown spot ( Septoria glycines), a common fungal disease of soybeans that occurs in warm and wet weather. This disease rarely causes significant yield loss; however, yield losses of 5 – 8 % may occur under severe conditions when much defoliation occurs.  This year has been very, wet, so many have chose to make a fungicide application. 

The above pictures all show the symptoms of the foliar disease that was appearing in the lower canopy of this farmer's soybean field.


As time passed, it appeared that another foliar disease, with different symptoms, started to show in the mid-canopy of this soybean field.  The spots were much darker and were more symptomatic of a bacterial disease.  The farmer wanted to identify the disease(s), because this would explain why the fungicide was "NOT WORKING".  A fungicide will have no effect on bacterial diseases.

As it turns out, the disease that was making it's debut in the mid-canopy was none other but, bacterial pustule (Xanthomonas axonopodis pv. glycines). If you examine the lesion on the underside of the leaf with magnification, you will be able to see pustules forming and this is how we distinguish bacterial pustule from bacterial blight.


However, the Plant Clinic also examined the lesions under the microscope from the leaves that were from the lower canopy of this soybean field.  If you remember, these were the yellowing leaves, with lesions that were assumed to be caused by Septoria brown spot.  But, when these lesions were cut and placed under the microscope, there were no fungal spores to be found!  We found bacterial ooze!  The disease in the lower canopy was Bacterial blight (Pseudomonas savastanoi).


Bacterial ooze seen streaming from the bacterial blight lesion of the soybean.



I am 99.999999% sure that both of the foliar diseases found in this soybean field were caused by bacteria and there was no need for a foliar fungicide application.  Oops!

Identification of fire blight on apple and pear

Blog post by Qiong (Jane) Liu - University of Illinois Plant Clinic Grad Student

The most common bacterial disease for apple and pear during spring is fire blight. Fire blight is one the most common and destructive diseases of apple and pear, which is caused by bacteria Erwinia amylovora. The name” Fire Blight” comes from the appearance of the diseased plant tissue, which looks as though it had been scorched by fire. Usually, twig shoot and blossom start showing symptoms in the spring. Blossoms will first be water soaked and grayish green in appearance, and then turn brown or even black. Twig blight starts at the tips of shoots, and turns darker, with disease development. Shoot symptoms develops rapidly. Leaves on the diseased shoot become fully, necrotic in a short period of time, thus giving the tree a burnt appearance. The end of the branch may resemble an upside down “J” or "shepherds crook", a distinctive symptom of fire blight (Fig.1).  Under high humid conditions, milky droplets of bacterial ooze, containing millions of Erwinia amylovora, may be observed from diseased plant tissue
(Fig.2 and 3).


Fig.1 Diseased pear branch showing upside down "J" symptoms

Fig.2 Bacterial ooze from diseased leaves.
 
Fig.3 Bacterial ooze on fruit



Once we receive a suspicious fire blight sample, the first step is to confirm that it is a bacterial disease. The bacterial ooze test is the simplest and quickest way to differentiate bacterial disease from other problems. If the symptoms are due to a bacterial disease, bacterial streaming or "ooze" can be seen from a cross section of a petiole under a microscope(Fig.3).


Fig.4 Bacteria streaming observed from cross section of leaf petiole under the microscope.



After the ooze test, we can isolate the bacteria from the diseased plant material. The key to successfully harvesting bacteria from the affected area on the plant is to select freshly infected tissue. Most of the time, it’s hard to isolate pathogenic bacteria from dried out samples. Petioles, especially those that are recently infected and still soft, are usually the best area to recover Erwina amylovora from the affected plant. The next step is to observe the bacterial colonies that grow on media from isolation.

Isolation of Erwinia amylovora on Kings B media.


Bacterial colonies suspected to be Erwinia amylovora in culture can be selected for further testing to determine the species of the isolated bacteria. The combination of PCR amplification and electrophoresis is an accurate method to confirm bacterial species on the molecular level. A bacterial isolate, which has been confirmed as Erwinia amylovora will be used as positive control.  This will provide a reference for the bacterial isolates taken from sample of unknown bacteria. Sample isolates with PCR products that show the same bright band as the positive control will be confirmed to be Erwinia amylovora (Fig. 5).

Fig.5 From left to right, first well is loaded with DNA ladder, the third well is loaded with Erwinia amylovora PCR products as positive control, and the rest of the wells are loaded with PCR products of the unknown sample isolates. All of the isolates in this picture have been confirmed to be Erwinia amylovora.